The role of duplication in the expression of a variable surface glycoprotein gene of Trypanosoma brucei

The variable surface glycoprotein (VSG) genes of Trypanosoma brucei have been classified into two groups depending upon whether or not duplication of the genes is observed when they are expressed. We report here the observation of duplication apparently linked to expression of the ILTaT 1.3 gene in the ETaR 1 trypanosome stock. In the ILTaR 1 stock, expression of the ILTaT 1.3 VSG did not involve a new duplication, but instead activation of a preexisting gene copy that had been apparently generated earlier by a duplication event analogous to that directly observed in the ETaR 1 trypanosomes. The results suggest that the well-characterised gene duplications found with other VSG genes are common to all VSG genes but are not directly responsible for controlling expression. All currently available data can be accommodated by a model that assumes that gene duplication and replacement occurs independently of antigenic switching.     

Accumulation pattern of amino acid substitutions in protein evolution

Summary A simple method for the evolutionary analysis of amino acid sequence data is presented and used to examine whether the number of variable sites (NVS) of a protein is constant during its evolution. The NVSs for hemoglobin and for mitochondrial cytochrome c are each found to be almost constant, and the ratio between the NVSs is close to the ratio between the unit evolutionary periods. This indicates that the substitution rate per variable site is almost uniform for these proteins, as the neutral theory claims. An advantage of the present analysis is that it can be done without knowledge of paleontological divergence times and can be extended to bacterial proteins such as bacterial c-type cytochromes. It is suggested that the NVS of cytochrome c has been almost constant even over the long period (ca. 3.0 billion years) of bacterial evolution but that at least two different substitution rates are necessary to describe the accumulated changes in the sequence. This two clock interpretation is consistent with fossil evidence for the appearance times of photosynthetic bacteria and eukaryotes.     

Dendrochronology in Coniferous forests around Lake Rara,West Nepal

In two forest stands, one domonated byAbies spectabilis, and the other byPinus wallichiana-Picea smithiana, 198 cores were taken from 105 conifers in May 1983 and the annual ring widths were measured. The annual ring widths usually had significant similarities between cores taken from the same tree and with cores taken from different trees. these similarities increased with tree size. The climatic change affected the large trees more strongly than it did the small trees. Micro environmental changes, such as canopy gap affected the small trees more strongly. Annual ring widths were also correlated with the annual precipitations at Jumla 30 km south of the plots for a recent 20 year period. A multiple regression analysis between ring width and seasonal precipitation showed that the growth ofA. spectabilis was correlated primarily with the rain from May to August and secondarily with that from September to December in the previous year.     

The choice between desiccation of wetlands or the spread of Rhine water over The Netherlands

The dry summer of 1976 triggered a wholesale installation of sprinkler systems for agriculture. This dry summer also revealed areas in The Netherlands most susceptible to drought, namely sandy regions and the coastal fringe. This resulted in distribution of Rhine water to new areas, and in quantities hitherto unknown. The Second National Water Management Plan (1982) consequently focussed on enlarging the capacity of water distribution works. This distribution has led to a multitude of ecological effects, such as changes in salinity and nutrient concentration, as well as the spreading of contaminants. Consequently, the Third National Water Management Plan (1990) includes fewer distribution works because of the adverse environmental effects and the reduced feasibility due to increasing costs and decreasing agricultural benefits.A climatic change as predicted may result in climatic conditions in The Netherlands resembling those of France or the Mediterranean, implying drier summers and more precipitation in winter. An increased frequency of dry summers will no doubt revive water distribution plans now shelved and may even bring new ones to the drawing board. An increase in Rhine water distribution will have serious consequences for many aquatic and terrestrial ecosystems, as will a lowering of the groundwater table. In this paper we will discuss the dilemma of choosing between allowing increased desiccation of wetlands as the climate becomes drier or increasing the distribution of Rhinewater and the potential ecological effects of these choices. Alternative strategies to water management also are discussed.This article is largely based on Duel et al. 1989.     

Is vegetation in equilibrium with climate? How to interpret late-Quaternary pollen data

Current methods for estimating past climatic patterns from pollen data require that the vegetation be in dynamic equilibrium with the climate. Because climate varies continuously on all time scales, judgement about equilibrium conditions must be made separately for each frequency band (i.e. time scale) of climatic change. For equilibrium conditions to exist between vegetation and climatic changes at a particular time scale, the climatic response time of the vegetation must be small compared to the time scale of climatic variation to which it is responding. The time required for vegetation to respond completely to climatic forcing at a time scale of 10⁴ yr is still unknown, but records of the vegetational response to climatic events of 500-to 1000-yr duration provide evidence for relatively short response times. Independent estimates for the possible patterns and timing of late-Quaternary climate changes suggest that much of the vegetational evidence previously interpreted as resulting from disequilibrium conditions can instead be interpreted as resulting from the individualistic response of plant taxa to the different regional patterns of temperature and precipitation change. The differences among taxa in their response to climate can lead a) to rates and direction of plant-population movements that differ among taxa and b) to fossil assemblages that differ from any modern assemblage. An example of late-Holocene vegetational change in southern Quebec illustrates how separate changes in summer and winter climates may explain the simultaneous expansion of spruce (Picea) populations southward and beech (Fagus) populations northward.     

Vegetation responses to past climatic variation

Vegetation responses to climatic change can be studied retrospectively by utilizing the Quaternary fossil record. There has been controversy over the extent to which major changes in vegetation patterns at the continental scale lag behind the climatic changes that drive them, and to what extent vegetation can ever be said to be in equilibrium with climate. The equilibrium question has no single answer. The predominant mode of vegetation response to climatic change depends on the space and time frame and resolution of the data set in which the response is observed.Vegetation (as observed on particular space and time scales) can be in dynamic equilibrium with climate if its response time is sufficiently fast in relation to the rate of climatic change to which it is observed to be responding. Several processes can be involved in the response: successional, migrational, edaphic, and evolutionary. Successional response times can be deduced from forest succession models. The other processes are less well understood and different ideas exist concerning their rates. According to one hypothesis, migrational lags caused delays of thousands of years in the postglacial dynamics of forest composition. The alternative hypothesis explains these changes as dynamic equilibrium responses to changes in climatic seasonality and climatic anomaly patterns. Neither hypothesis need be universally true; gradient analysis and forest succession models are among the techniques that can be used in inferential tests of these hypotheses for particular space-time regions.Dynamic equilibrium may often be a reasonable approximation for the responses of the broadest continental-scale forest patterns to orbitally induced climatic changes. But as spatial and temporal frames of observation are diminished and resolution increased, biotic processes must eventually come to dominate. At sufficiently fine scales the main observable phenomena are successional responses to natural disturbance events. The late-Quaternary record of vegetation change allows a choice of observation scales and thus provides a continuum of possibilities for study, ranging from long-term dynamic bioclimatology to more conventional vegetation dynamics.I thank Margaret Davis, Honor Prentice, Jim Ritchie, Al Solomon, Geoff Spaulding and Tom Webb for their reviews of earlier drafts. Research supported by a US Department of Energy, Carbon Dioxide Research Division, grant to Brown University and a Swedish Natural Science Research Council grant to the project SlsSimulation of Natural Forest Dynamics.I thank Margaret Davis, Honor Prentice, Jim Ritchie, Al Solomon, Geoff Spaulding and Tom Webb for their reviews of earlier drafts. Research supported by a US Department of Energy, Carbon Dioxide Research Division, grant to Brown University and a Swedish Natural Science Research Council grant to the project SlsSimulation of Natural Forest Dynamics.     

Characterization of chlorophyll fluorescence quenching in chloroplasts by fluorescence spectroscopy at 77 K II. ATP-dependent quenching

In intact, uncoupled type B chloroplasts from spinach, added ATP causes a slow light-induced decline ($\text{t}{}_{\mathrm{<mtext>1</mtext><mtext>2</mtext>}}\text{≈ 3}\text{min}$) of chlorophyll a fluorescence at room temperature. Fluorescence spectra were recorded after fast cooling to 77 K and normalized with fluorescein as an internal standard. Related to the fluorescence quenching at room temperature, an increase in Photosystem (PS) I fluorescence (F₇₃₅) and a decrease in PS II fluorescence (F₆₉₅) were observed in the low-temperature spectra. The change in the $\text{F}{}_{735}\text{F}{}_{695}$ ratio was abolished by the presence of methyl viologen. Fluorescence induction at 77 K of chloroplasts frozen in the quenched state showed lowered variable (F_v) and initial (F₀) fluorescence at 690 nm and an increase in F₀ at 735 nm. The results are interpreted as indicating an ATP-dependent change of the initial distribution of excitation energy in favor of PS I, which is controlled by the redox state of the electron-transport chain and, according to current theories, is caused by phosphorylation of the light-harvesting complex.